![]() There’s no significant processing speedup that I can think of running headless, other than not having the GUI on, so if you’re really after speed, you may want to look into batch processing, ie sending every movie off to a different computer. Another useful feature of the software is the ability to annotate images and to extract metadata either from the path or the file name itself. m file to execute all the modules, passing handles back and forth, like you would in a pipeline. CellProfiler generates overlays of the detected object outlines on images, for instance on RGB color merges of the various channels created within CellProfiler or directly on the original images. Once the handles are set in Matlab, I would just write an.
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